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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_36503261_36503978_R

Intron Information:

Intron Rank:
1
Intron Class:
major-like
Intron Phase:
1
Intron Coordinates:
36503261 - 36503978
Intron Length:
718

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTATGTGCT
5'SS Class:
strong_major
3'SS Sequence:
CCACCTAATGAAG|C
3'SS Class:
degenerate_major
U2 Branch Point Sequence:
TTTCCAT
U12 Branch Point Sequence:
TCCCACCTAATG
Flanking Amino Acid:
RIPAAEVHEEAHEEAHAEEV
Intron Amino Acid Position:
78

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
88.4
0.91
0.8
80.6
31.9
Major BPS
77.3
0.68
1.2
86.7
32.3
Major PPT
53.5
0.08
1.1
53.2
34.4
Minor 5ss
41.4
-1
3.1
59
45.7
Minor BPS
46.2
-0.4
1.9
50.36
43.8

Associated Gene:

Gene:
TNNT3
Ensembl Gene ID:
ENSAPLG00000011980
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000017855
36483186 - 36504210
21025
ENSAPLT00000035197
36481858 - 36504963
23106
ENSAPLT00000017207
36483186 - 36504210
21025
ENSAPLT00000032722
36483186 - 36504210
21025
ENSAPLT00000026755
36481858 - 36504963
23106
ENSAPLT00000025535
36482836 - 36504963
22128