About Basic Search Advanced Search Downloads
Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_36505055_36505903_R


Intron Information:

Intron Rank:
4

Intron Class:
major

Intron Phase:
1

Intron Coordinates:
36505055 - 36505903

Intron Length:
849

Sequence Information:

Terminal Dinucleotides:
GT-AG

5'SS Sequence:
AAG|GTATGTGAC

5'SS Class:
strong_major

3'SS Sequence:
TTCCCACCCACAG|A

3'SS Class:
major_PPT

U2 Branch Point Sequence:
TTCCCAC

U12 Branch Point Sequence:
CGTTTCCCACCC

Flanking Amino Acid:
EEYEEEAHEEEEVQEEEEAP

Intron Amino Acid Position:
22

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev

Major 5ss
87.7
0.89
0.9
77.5
30.7

Major BPS
62.4
0.31
1.2
72.4
34.6

Major PPT
72.3
0.5
0.8
65.4
29.3

Minor 5ss
39.1
-1.2
3.1
51.5
45.7

Minor BPS
43.5
-0.5
2.1
55.52
42.7

Associated Gene:

Gene:
TNNT3

Ensembl Gene ID:

Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length

36482836 - 36509281
26446

36482836 - 36509281
26446

36482836 - 36509281
26446