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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_36507391_36508166_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
36507391 - 36508166
Intron Length:
776

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AGG|GTAAGTCTG
5'SS Class:
strong_major
3'SS Sequence:
TATATCAATGCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATATCAA
U12 Branch Point Sequence:
TCTATATCAATG
Flanking Amino Acid:
SDTEEVEQGEEEYEEEAHEE
Intron Amino Acid Position:
12

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.1
0.83
1
72.7
44.5
Major BPS
70.2
0.5
1
72.1
33
Major PPT
70.5
0.46
1
64
41.3
Minor 5ss
37.4
-1.4
3
42.1
44.4
Minor BPS
46.5
-0.4
1.8
53.04
42

Associated Gene:

Gene:
TNNT3
Ensembl Gene ID:
ENSAPLG00000011980
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000037771
36482836 - 36509281
26446
ENSAPLT00000012535
36482836 - 36509281
26446
ENSAPLT00000042675
36482836 - 36509281
26446