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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_36514837_36520126_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
5UTR
Intron Coordinates:
36514837 - 36520126
Intron Length:
5290

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAACGTGC
5'SS Class:
major
3'SS Sequence:
TTTGAACTTGCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTGAA
U12 Branch Point Sequence:
ATGTTTTGAACT
Flanking Amino Acid:
5UTR
Intron Amino Acid Position:
5UTR

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
75.2
0.59
1.2
64.8
42.3
Major BPS
87.2
0.92
0.8
77.7
37.1
Major PPT
78
0.63
0.9
70.7
39.8
Minor 5ss
42.6
-0.8
3.2
59.3
45.5
Minor BPS
65.9
0.58
1.4
78.59
37.8

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000023507
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000029024
36514759 - 36528759
14001