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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_36533660_36534314_R

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
36533660 - 36534314
Intron Length:
655

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAGGCAA
5'SS Class:
strong_major
3'SS Sequence:
CTCATCTTCTCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ACCTCAT
U12 Branch Point Sequence:
AGAACCTCATCT
Flanking Amino Acid:
QSAVKTPACKDIVAGDIVSK
Intron Amino Acid Position:
278

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
88.8
0.92
0.9
74.9
37
Major BPS
73.5
0.58
1
73.6
32.5
Major PPT
78.5
0.64
0.8
76.1
32.3
Minor 5ss
30.1
-2.3
3.2
37.9
46.9
Minor BPS
48.8
-0
1.9
65.88
43.8

Associated Gene:

Gene:
LSP1
Ensembl Gene ID:
ENSAPLG00000011632
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000012143
36532788 - 36561976
29189