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Intron Name: Anas_platyrhynchos_platyrhynchos_5_36534456_36534821_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

36534456 - 36534821

Intron Length:

366

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

GAG|GTGAGGTGC

5'SS Class:

strong_major

3'SS Sequence:

ATATCTCTTCTAG|A

3'SS Class:

major_PPT

U2 Branch Point Sequence:

TTTCCAT

U12 Branch Point Sequence:

CTTTCCATATCT

Flanking Amino Acid:

RLEQYTQAIETSTKAPKPVR

Intron Amino Acid Position:

231

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

84.5

0.81

0.9

37.3

Major BPS

77.3

0.68

1.2

86.7

32.3

Major PPT

75.3

0.57

0.9

39.6

Minor 5ss

31.6

-2.1

3.2

41.1

45.6

Minor BPS

63.8

0.51

1.9

84.93

41.5

Associated Gene:

Gene:

LSP1

Ensembl Gene ID:

ENSAPLG00000011632

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000034612

36534316 - 36561976

27661

ENSAPLT00000012143

36532788 - 36561976

29189