Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_36535139_36538350_R

Intron Information:

Intron Rank:

Intron Class:

major-like

Intron Phase:

Intron Coordinates:

36535139 - 36538350

Intron Length:

3212

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

GAG|GTGAGATCA

5'SS Class:

strong_major

3'SS Sequence:

ACATCCACCTGAG|G

3'SS Class:

degenerate_major

U2 Branch Point Sequence:

CTGAAAT

U12 Branch Point Sequence:

GTGACCTACATC

Flanking Amino Acid:

QHEEERVEQEAHREMLTPVS

Intron Amino Acid Position:

174

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

87.1

0.87

0.8

76.5

27.7

Major BPS

54.8

0.12

1.3

62.7

40.5

Major PPT

46.9

-0.1

1.6

37.1

Minor 5ss

32.8

-2

39.5

45.9

Minor BPS

45.5

-0.3

2.1

55.35

43.3

Associated Gene:

Gene:

LSP1

Ensembl Gene ID:

ENSAPLG00000011632

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000012143

36532788 - 36561976

29189