Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_36543275_36561896_R

Intron Information:

Intron Rank:

Intron Class:

major-like

Intron Phase:

Intron Coordinates:

36543275 - 36561896

Intron Length:

18622

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

GAG|GTGAAGCCT

5'SS Class:

major

3'SS Sequence:

CTGTTTTGGCAAG|G

3'SS Class:

degenerate_major

U2 Branch Point Sequence:

CTGAGAT

U12 Branch Point Sequence:

TGGCACTGAGAT

Flanking Amino Acid:

VGDESHQESERLTAQWSVED

Intron Amino Acid Position:

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

75.3

0.6

65.5

Major BPS

51.7

0.04

1.3

50.1

44.2

Major PPT

0.18

1.2

59.5

45.3

Minor 5ss

27.3

-2.6

3.3

39.3

46.1

Minor BPS

42.8

-0.4

1.9

58.26

43.5

Associated Gene:

Gene:

LSP1

Ensembl Gene ID:

ENSAPLG00000011632

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000034612

36534316 - 36561976

27661

ENSAPLT00000012143

36532788 - 36561976

29189