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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_36564071_36564279_R

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
36564071 - 36564279
Intron Length:
209

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAACACC
5'SS Class:
strong_major
3'SS Sequence:
TTTTTCCTCCCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TACTCAA
U12 Branch Point Sequence:
TGGTACTCAACA
Flanking Amino Acid:
SLPGSMQELQELCKKLHAKI
Intron Amino Acid Position:
66

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.4
0.72
1
72.1
37.7
Major BPS
77.9
0.69
0.8
77.9
25.8
Major PPT
88.3
0.86
0.7
81.3
30.7
Minor 5ss
40
-1.1
2.9
52.8
44.1
Minor BPS
59.4
0.29
1.8
69.89
41.8

Associated Gene:

Gene:
TNNI2
Ensembl Gene ID:
ENSAPLG00000011264
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000011745
36563029 - 36564875
1847