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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_36564759_36564851_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
36564759 - 36564851
Intron Length:
93

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAT|GTGGGTAAA
5'SS Class:
major
3'SS Sequence:
TTCCTTCCTACAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CTATCAT
U12 Branch Point Sequence:
TTTTCTATCATT
Flanking Amino Acid:
MKLVWGPNKKRRAATARR
Intron Amino Acid Position:
9

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
71.7
0.51
1.1
72.3
34.3
Major BPS
75.9
0.64
1.1
77.7
35.2
Major PPT
85.5
0.8
0.7
80.2
25.4
Minor 5ss
30.6
-2.2
3
36.7
40.9
Minor BPS
58.9
0.36
2
84.42
36.8

Associated Gene:

Gene:
TNNI2
Ensembl Gene ID:
ENSAPLG00000011264
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000011745
36563029 - 36564875
1847