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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_36571086_36571872_R

Intron Information:

Intron Rank:
9
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
36571086 - 36571872
Intron Length:
787

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGGGTGAG
5'SS Class:
strong_major
3'SS Sequence:
TCTGTTCCTCCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TGCTCAT
U12 Branch Point Sequence:
CTTGTGTTGACT
Flanking Amino Acid:
FSRGSPAVLHRLLPKPDDE*
Intron Amino Acid Position:
381

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.6
0.72
1
68.4
38.7
Major BPS
79.7
0.74
1
79.6
35.6
Major PPT
82.2
0.72
0.8
73.6
37
Minor 5ss
25.2
-2.9
3.2
30
43.6
Minor BPS
50.4
0.09
2.2
73.86
43.8

Associated Gene:

Gene:
SYT8
Ensembl Gene ID:
ENSAPLG00000011119
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000011574
36571058 - 36578461
7404