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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_36571963_36572044_R

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
36571963 - 36572044
Intron Length:
82

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGAGTGGG
5'SS Class:
strong_major
3'SS Sequence:
CTTCCCTCCCCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTCAG
U12 Branch Point Sequence:
TTTTTCAGCACT
Flanking Amino Acid:
KVPPEEEGRHRPNHGAPPED
Intron Amino Acid Position:
351

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
89
0.92
0.8
72.2
39.5
Major BPS
76
0.65
1.5
85.7
34.9
Major PPT
77.5
0.62
0.7
69.2
31.4
Minor 5ss
26.6
-2.7
3
31.5
42.8
Minor BPS
50.2
0.09
2.2
81.51
39.8

Associated Gene:

Gene:
SYT8
Ensembl Gene ID:
ENSAPLG00000011119
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000011574
36571058 - 36578461
7404