Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_36577198_36577392_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

36577198 - 36577392

Intron Length:

195

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

GAG|GTGGGGCTG

5'SS Class:

major

3'SS Sequence:

TTGTTCTTTCAAG|C

3'SS Class:

major_PPT

U2 Branch Point Sequence:

TGTGCAT

U12 Branch Point Sequence:

TGTTCTTTCAAG

Flanking Amino Acid:

SLEYNFHAQELKVGVKQAAD

Intron Amino Acid Position:

123

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

74.3

0.57

1.1

60.4

45.8

Major BPS

59.8

0.25

1.5

71.4

45.1

Major PPT

76.9

0.6

75.7

38.5

Minor 5ss

27.5

-2.6

3.5

37.1

47.5

Minor BPS

55.1

0.01

65.2

42.6

Associated Gene:

Gene:

SYT8

Ensembl Gene ID:

ENSAPLG00000011119

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000011574

36571058 - 36578461

7404

ENSAPLT00000019633

36574495 - 36578461

3967