Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_36577969_36578332_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

36577969 - 36578332

Intron Length:

364

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CGT|GTGAGTACA

5'SS Class:

major

3'SS Sequence:

CTTGTTGCACCAG|T

3'SS Class:

major_PPT

U2 Branch Point Sequence:

TTTTAAC

U12 Branch Point Sequence:

TTGCTTTTAACT

Flanking Amino Acid:

FLSGFVGRIPLPRWALIAVA

Intron Amino Acid Position:

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

71.2

0.5

1.1

69.7

36.3

Major BPS

89.7

0.98

0.7

89.9

Major PPT

0.45

62.7

43.1

Minor 5ss

32.6

-2

2.7

35.6

40.5

Minor BPS

74.6

0.85

1.2

84.67

Associated Gene:

Gene:

SYT8

Ensembl Gene ID:

ENSAPLG00000011119

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000019633

36574495 - 36578461

3967

ENSAPLT00000011574

36571058 - 36578461

7404