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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_36583094_36583672_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
36583094 - 36583672
Intron Length:
579

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAGAGTT
5'SS Class:
strong_major
3'SS Sequence:
CTTTCTCCTGCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CCCCCAA
U12 Branch Point Sequence:
GTTCCCCCAACC
Flanking Amino Acid:
STVVNPSVKQKDPSKALVIA
Intron Amino Acid Position:
16

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
93.5
1.02
0.7
88
25.3
Major BPS
45.3
-0.2
1.2
50
35.2
Major PPT
86.5
0.82
0.7
81.2
23.9
Minor 5ss
36.4
-1.5
3.6
55.7
48.5
Minor BPS
54.3
0.11
1.9
70.65
39.9

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000011102
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000011549
36583040 - 36586708
3669