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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_36583841_36584193_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
36583841 - 36584193
Intron Length:
353

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGAGCCCC
5'SS Class:
strong_major
3'SS Sequence:
CTGTTCCTCCTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
GTCTCAT
U12 Branch Point Sequence:
AGAGTCTCATCT
Flanking Amino Acid:
PPGTAFAFIQAVQYVNKKIL
Intron Amino Acid Position:
72

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.8
0.77
0.9
65.8
40.2
Major BPS
77.2
0.67
1.2
79.6
35.6
Major PPT
73.4
0.53
0.8
66
35.9
Minor 5ss
33.7
-1.9
3
42.6
44.4
Minor BPS
45.7
-0.2
1.8
59.98
43.2

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000011102
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000011549
36583040 - 36586708
3669