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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_36584324_36584510_F

Intron Information:

Intron Rank:
3
Intron Class:
major-like
Intron Phase:
1
Intron Coordinates:
36584324 - 36584510
Intron Length:
187

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATG|GTAAGGAGG
5'SS Class:
strong_major
3'SS Sequence:
CCCTGACCCAAAG|G
3'SS Class:
degenerate_major
U2 Branch Point Sequence:
CTTACAT
U12 Branch Point Sequence:
ATTCCCTGACCC
Flanking Amino Acid:
VRIINSAKHYGLEISKFCFV
Intron Amino Acid Position:
115

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.7
0.72
1
66.1
45
Major BPS
70.4
0.51
1.1
78.7
33.6
Major PPT
53.6
0.08
1
51.7
30.6
Minor 5ss
31.8
-2.1
3.1
36.6
41.8
Minor BPS
58.2
0.24
1.8
71.61
39

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000011102
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000011549
36583040 - 36586708
3669