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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_36593177_36596622_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
36593177 - 36596622
Intron Length:
3446

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAC|GTGAGTACC
5'SS Class:
major
3'SS Sequence:
TCCCTGGCTGCAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
AATTAAT
U12 Branch Point Sequence:
TAATGCTCATCT
Flanking Amino Acid:
HARDPEELHGLLHHKYDASK
Intron Amino Acid Position:
144

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
75.5
0.6
1.2
74.9
35.3
Major BPS
83
0.82
0.8
82
24.9
Major PPT
71.3
0.48
0.9
64.5
36.5
Minor 5ss
32.9
-1.9
2.6
37.5
32.2
Minor BPS
48.1
-0
2.2
70.61
45.6

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000009985
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000017674
36592467 - 36605186
12720