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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_36595201_36596622_F

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
36595201 - 36596622
Intron Length:
1422

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GCT|GTAAGTGGG
5'SS Class:
major
3'SS Sequence:
TCCCTGGCTGCAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
AATTAAT
U12 Branch Point Sequence:
TAATGCTCATCT
Flanking Amino Acid:
VHCHLLDIACLLHHKYDASK
Intron Amino Acid Position:
116

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
72
0.52
1.1
60.4
44.5
Major BPS
83
0.82
0.8
82
24.9
Major PPT
71.3
0.48
0.9
64.5
36.5
Minor 5ss
35
-1.7
3.3
50.1
46.1
Minor BPS
48.1
-0
2.2
70.61
45.6

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000009985
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000010459
36592675 - 36605422
12748