Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_36600646_36601524_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

36600646 - 36601524

Intron Length:

879

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CAG|GTACTGTTG

5'SS Class:

major

3'SS Sequence:

GCCTTTCTTGCAG|A

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

CTCTGAT

U12 Branch Point Sequence:

ATGTTGGTGACT

Flanking Amino Acid:

EKNIFSFYLNRDPTAQPGGE

Intron Amino Acid Position:

222

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

70.5

0.48

1.1

63.4

43.3

Major BPS

0.72

38.9

Major PPT

0.72

0.8

76.2

32.4

Minor 5ss

39.3

-1.2

3.5

55.6

48.6

Minor BPS

44.5

-0.3

2.6

68.1

43.4

Associated Gene:

Gene:

Ensembl Gene ID:

ENSAPLG00000009985

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000017674

36592467 - 36605186

12720

ENSAPLT00000010459

36592675 - 36605422

12748