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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_3661346_3670325_R

Intron Information:

Intron Rank:
130354
Intron Class:
major
Intron Phase:
Intron Coordinates:
3661346 - 3670325
Intron Length:
8980

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTATGTCCT
5'SS Class:
strong_major
3'SS Sequence:
CTGTTTCTGACAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CTATCAA
U12 Branch Point Sequence:
TGTTTCTGACAG
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87.2
0.88
0.9
77.1
37.8
Major BPS
66.7
0.42
1.1
69.7
35.6
Major PPT
75.7
0.58
1
72.2
37.9
Minor 5ss
42.9
-0.8
2.8
59.8
44.7
Minor BPS
48.1
-0.2
1.9
58.04
43.2

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000017381
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000045934
3660945 - 3670621
9677