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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_36640089_36653401_F

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
36640089 - 36653401
Intron Length:
13313

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAGGAGCA
5'SS Class:
strong_major
3'SS Sequence:
GTTTTCTCTGCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
AGCTCAA
U12 Branch Point Sequence:
GTGAGCTCAATG
Flanking Amino Acid:
SCFHSVSILTGGFATFSSCF
Intron Amino Acid Position:
124

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.7
0.72
1
68.7
36.4
Major BPS
61.8
0.29
1.1
63.4
35.6
Major PPT
86.8
0.83
0.7
81.5
30.6
Minor 5ss
29.3
-2.4
3.5
39
46.3
Minor BPS
45.2
-0.5
2
49.07
44.7

Associated Gene:

Gene:
DUSP8
Ensembl Gene ID:
ENSAPLG00000009896
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000010312
36622253 - 36657416
35164