Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_3670441_3684350_R

Intron Information:

Intron Rank:

130352

Intron Class:

major

Intron Phase:

Intron Coordinates:

3670441 - 3684350

Intron Length:

13910

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CAG|GTCAGTGCA

5'SS Class:

strong_major

3'SS Sequence:

TTTATGTTTTCAG|G

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

TTGTCAT

U12 Branch Point Sequence:

TTTTCTTTTATG

Flanking Amino Acid:

Intron Amino Acid Position:

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

80.6

0.72

1.2

35.3

Major BPS

84.8

0.86

1.1

85.7

34.9

Major PPT

87.1

0.84

0.8

84.7

35.8

Minor 5ss

28.4

-2.5

2.9

33.4

41.6

Minor BPS

68.5

0.44

1.6

74.98

37.4

Associated Gene:

Gene:

Ensembl Gene ID:

ENSAPLG00000017381

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000027420

3669917 - 3701385

31469