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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_36774911_36776131_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
36774911 - 36776131
Intron Length:
1221

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ACA|GTGAGTATT
5'SS Class:
major
3'SS Sequence:
GTTTATTTTTCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTCTGAA
U12 Branch Point Sequence:
TACTTCTGAATT
Flanking Amino Acid:
IDLNEWLASNTTTFFHHINL
Intron Amino Acid Position:
91

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
76.2
0.62
1
81
32.8
Major BPS
82.1
0.8
0.8
71.6
36.4
Major PPT
87.4
0.84
0.8
84.8
35.4
Minor 5ss
38.4
-1.3
3
57
41.2
Minor BPS
66.4
0.59
1.4
77.52
39.1

Associated Gene:

Gene:
MOB2
Ensembl Gene ID:
ENSAPLG00000018671
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000038148
36675263 - 36788171
112909
ENSAPLT00000030745
36758304 - 36788171
29868
ENSAPLT00000039914
36733516 - 36788171
54656