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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_36776226_36785074_F

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
36776226 - 36785074
Intron Length:
8849

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TAC|GTAAGTCGG
5'SS Class:
major
3'SS Sequence:
ATTCTCTCCACAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
AGTACAA
U12 Branch Point Sequence:
ATTCTCTCCACA
Flanking Amino Acid:
ESCQTMAVCNTQYYWYDERG
Intron Amino Acid Position:
122

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
75.3
0.6
1.3
63.6
48.1
Major BPS
49.8
-0
1.1
58.8
38.1
Major PPT
79
0.65
0.8
73.1
31.1
Minor 5ss
35
-1.7
2.9
40.6
38.7
Minor BPS
49.5
-0
2
67.27
38.9

Associated Gene:

Gene:
MOB2
Ensembl Gene ID:
ENSAPLG00000018671
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000039914
36733516 - 36788171
54656
ENSAPLT00000038148
36675263 - 36788171
112909
ENSAPLT00000030745
36758304 - 36788171
29868