Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_36789691_36827173_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

36789691 - 36827173

Intron Length:

37483

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CAG|GTAAGTAGT

5'SS Class:

strong_major

3'SS Sequence:

TCTGTACTTTCAG|G

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

TATAAAA

U12 Branch Point Sequence:

GCTTCTGTACTT

Flanking Amino Acid:

HDQPSVQQLSGVSNVCRCNS

Intron Amino Acid Position:

615

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

97.3

1.11

0.7

90.9

28.7

Major BPS

65.3

0.38

71.6

30.1

Major PPT

81.3

0.7

0.8

77.8

35.6

Minor 5ss

37.5

-1.4

2.8

51.6

44.9

Minor BPS

47.5

-0.1

2.2

67.55

44.3

Associated Gene:

Gene:

BRSK2

Ensembl Gene ID:

ENSAPLG00000009397

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000009832

36789647 - 37102032

312386

ENSAPLT00000047976

36788647 - 37102032

313386

ENSAPLT00000047066

36788647 - 37102032

313386

ENSAPLT00000044709

36789647 - 37059618

269972