About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_36805258_36805910_R

Intron Information:

Intron Rank:
21
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
36805258 - 36805910
Intron Length:
653

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGAGCCAT
5'SS Class:
strong_major
3'SS Sequence:
GCTCTGCTACCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCTGAC
U12 Branch Point Sequence:
TGTTTCTGACGA
Flanking Amino Acid:
QQLSDEKNGQELSRKVNMSA
Intron Amino Acid Position:
684

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85
0.83
0.9
74
38.4
Major BPS
81.4
0.78
0.9
71.3
36.7
Major PPT
67.2
0.39
1
58.6
41.9
Minor 5ss
34.1
-1.8
3.2
46.7
48.6
Minor BPS
48.3
-0.1
2
64.34
42.1

Associated Gene:

Gene:
BRSK2
Ensembl Gene ID:
ENSAPLG00000009397
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000037008
36804516 - 37103380
298865
ENSAPLT00000028834
36804670 - 37058536
253867
ENSAPLT00000024570
36804670 - 37102032
297363
ENSAPLT00000044466
36804516 - 37103380
298865
ENSAPLT00000040801
36804516 - 37058536
254021