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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_36805928_36818729_R

Intron Information:

Intron Rank:
20
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
36805928 - 36818729
Intron Length:
12802

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GTG|GTAAGAACT
5'SS Class:
strong_major
3'SS Sequence:
CAACTTTTTTCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
AATTAAA
U12 Branch Point Sequence:
ACTTCTTTGACG
Flanking Amino Acid:
ELMTGRLSKCDEKNGQELSR
Intron Amino Acid Position:
625

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.3
0.83
0.9
79.9
32.8
Major BPS
73.8
0.59
0.9
74
26.8
Major PPT
79.5
0.66
0.9
76.7
36.9
Minor 5ss
36.3
-1.6
3
48
41.5
Minor BPS
70.5
0.5
1.3
68.38
39.6

Associated Gene:

Gene:
BRSK2
Ensembl Gene ID:
ENSAPLG00000009397
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000037008
36804516 - 37103380
298865
ENSAPLT00000028834
36804670 - 37058536
253867
ENSAPLT00000044466
36804516 - 37103380
298865
ENSAPLT00000040801
36804516 - 37058536
254021