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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_36818778_36827173_R

Intron Information:

Intron Rank:
19
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
36818778 - 36827173
Intron Length:
8396

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAGTAGT
5'SS Class:
strong_major
3'SS Sequence:
TTCTATGATCCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CTATGAT
U12 Branch Point Sequence:
CGTTCTATGATC
Flanking Amino Acid:
HDQPSVQQLSDTTNCMELMT
Intron Amino Acid Position:
609

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
97.3
1.11
0.7
90.9
28.7
Major BPS
72.3
0.55
1.1
63.4
42.8
Major PPT
73.9
0.54
1
65.8
44.3
Minor 5ss
37.5
-1.4
2.8
51.6
44.9
Minor BPS
52.8
0.07
1.6
62.83
37.2

Associated Gene:

Gene:
BRSK2
Ensembl Gene ID:
ENSAPLG00000009397
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000040801
36804516 - 37058536
254021
ENSAPLT00000037008
36804516 - 37103380
298865
ENSAPLT00000028834
36804670 - 37058536
253867
ENSAPLT00000044466
36804516 - 37103380
298865