Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_36827264_36827940_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

36827264 - 36827940

Intron Length:

677

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CAG|GTAACCATG

5'SS Class:

major

3'SS Sequence:

TCTCTCCTCACAG|G

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

CTCTCAC

U12 Branch Point Sequence:

TCTCTCCTCACA

Flanking Amino Acid:

IYSVTFTLLSGPSRRFKRVV

Intron Amino Acid Position:

585

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

77.2

0.64

1.2

72.7

44.5

Major BPS

72.7

0.56

30.1

Major PPT

81.6

0.71

0.7

75.9

26.3

Minor 5ss

48.5

-0.1

2.6

45.2

Minor BPS

48.3

-0.1

2.1

64.87

41.6

Associated Gene:

Gene:

BRSK2

Ensembl Gene ID:

ENSAPLG00000009397

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000037008

36804516 - 37103380

298865

ENSAPLT00000047066

36788647 - 37102032

313386

ENSAPLT00000028834

36804670 - 37058536

253867

ENSAPLT00000044709

36789647 - 37059618

269972

ENSAPLT00000024570

36804670 - 37102032

297363

ENSAPLT00000044466

36804516 - 37103380

298865

ENSAPLT00000009832

36789647 - 37102032

312386

ENSAPLT00000040801

36804516 - 37058536

254021

ENSAPLT00000047976

36788647 - 37102032

313386