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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_36830236_36836547_R

Intron Information:

Intron Rank:
15
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
36830236 - 36836547
Intron Length:
6312

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AGA|GTAAGTAAA
5'SS Class:
major
3'SS Sequence:
TTCATCACATCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTCAT
U12 Branch Point Sequence:
ATATTCTAAACC
Flanking Amino Acid:
MSNLTPESSPELAKKSWFGN
Intron Amino Acid Position:
483

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78
0.66
1
77
33.6
Major BPS
100
1.24
0.5
100
0
Major PPT
69.8
0.45
1
68.1
37.3
Minor 5ss
36.3
-1.6
2.7
38.8
40.3
Minor BPS
65.5
0.46
1.6
73.19
37.6

Associated Gene:

Gene:
BRSK2
Ensembl Gene ID:
ENSAPLG00000009397
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000028834
36804670 - 37058536
253867
ENSAPLT00000044709
36789647 - 37059618
269972
ENSAPLT00000024570
36804670 - 37102032
297363
ENSAPLT00000044466
36804516 - 37103380
298865
ENSAPLT00000009832
36789647 - 37102032
312386
ENSAPLT00000040801
36804516 - 37058536
254021
ENSAPLT00000047976
36788647 - 37102032
313386
ENSAPLT00000037008
36804516 - 37103380
298865
ENSAPLT00000047066
36788647 - 37102032
313386