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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_36848166_36852173_R

Intron Information:

Intron Rank:
13
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
36848166 - 36852173
Intron Length:
4008

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTATAAACA
5'SS Class:
major
3'SS Sequence:
TTCCCTTTCCGAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TCTTCAT
U12 Branch Point Sequence:
TCTCTCTTCATT
Flanking Amino Acid:
EANPKFNKEERMASADPLGS
Intron Amino Acid Position:
432

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
74.6
0.58
1
69.4
34.6
Major BPS
87.4
0.93
0.9
87.9
29.5
Major PPT
60.7
0.24
1.7
68.2
37.4
Minor 5ss
39.2
-1.2
2.9
50
46
Minor BPS
59.5
0.38
1.7
76.4
40.9

Associated Gene:

Gene:
BRSK2
Ensembl Gene ID:
ENSAPLG00000009397
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000047976
36788647 - 37102032
313386
ENSAPLT00000044466
36804516 - 37103380
298865
ENSAPLT00000037008
36804516 - 37103380
298865
ENSAPLT00000024570
36804670 - 37102032
297363