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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_36875224_36878199_R

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
36875224 - 36878199
Intron Length:
2976

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GTG|GTGAGTCAT
5'SS Class:
strong_major
3'SS Sequence:
CACATCCCTGCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
AACTAAC
U12 Branch Point Sequence:
CTCCAACTAACT
Flanking Amino Acid:
CGVILFALLVGALPFDDDNL
Intron Amino Acid Position:
213

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.9
0.8
0.9
75.8
35.2
Major BPS
68
0.45
0.9
67.6
25.3
Major PPT
70
0.45
0.9
62.1
34.2
Minor 5ss
30.6
-2.2
2.9
38
41
Minor BPS
44.9
-0.3
2.1
64.61
45

Associated Gene:

Gene:
BRSK2
Ensembl Gene ID:
ENSAPLG00000009397
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000009832
36789647 - 37102032
312386
ENSAPLT00000040801
36804516 - 37058536
254021
ENSAPLT00000047976
36788647 - 37102032
313386
ENSAPLT00000037008
36804516 - 37103380
298865
ENSAPLT00000047066
36788647 - 37102032
313386
ENSAPLT00000028834
36804670 - 37058536
253867
ENSAPLT00000044709
36789647 - 37059618
269972
ENSAPLT00000024570
36804670 - 37102032
297363
ENSAPLT00000044466
36804516 - 37103380
298865