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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_36878269_36879365_R

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
36878269 - 36879365
Intron Length:
1097

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CGG|GTAAGATGA
5'SS Class:
strong_major
3'SS Sequence:
CATTGCTGTGCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTGAA
U12 Branch Point Sequence:
CTCTTTTGAACC
Flanking Amino Acid:
PHYACPEVIRGEKYDGRKAD
Intron Amino Acid Position:
190

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81
0.73
1
68.7
39.1
Major BPS
87.2
0.92
0.8
77.7
37.1
Major PPT
71.7
0.49
1
65.3
40.7
Minor 5ss
36.9
-1.5
3
39.1
46.1
Minor BPS
60.2
0.3
1.5
66
40.2

Associated Gene:

Gene:
BRSK2
Ensembl Gene ID:
ENSAPLG00000009397
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000024570
36804670 - 37102032
297363
ENSAPLT00000044466
36804516 - 37103380
298865
ENSAPLT00000009832
36789647 - 37102032
312386
ENSAPLT00000040801
36804516 - 37058536
254021
ENSAPLT00000047976
36788647 - 37102032
313386
ENSAPLT00000037008
36804516 - 37103380
298865
ENSAPLT00000047066
36788647 - 37102032
313386
ENSAPLT00000028834
36804670 - 37058536
253867
ENSAPLT00000044709
36789647 - 37059618
269972