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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_369279_381141_R

Intron Information:

Intron Rank:
9
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
369279 - 381141
Intron Length:
11863

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TCA|GTAAGTGTT
5'SS Class:
major
3'SS Sequence:
TTCTTTCTTGCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CACTGAT
U12 Branch Point Sequence:
TTGTACAGCACT
Flanking Amino Acid:
FLEQQRDPESYNKHLFVHIG
Intron Amino Acid Position:
220

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78.9
0.68
1
79.3
34.5
Major BPS
71.2
0.53
1
61
37.5
Major PPT
92.3
0.95
0.6
88.3
21.5
Minor 5ss
40.8
-1
3.4
63.8
41.6
Minor BPS
44.8
-0.3
2.3
71.06
45.1

Associated Gene:

Gene:
TEAD1
Ensembl Gene ID:
ENSAPLG00000016417
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000042611
355120 - 508802
153683
ENSAPLT00000040884
355120 - 508802
153683
ENSAPLT00000037311
355120 - 508802
153683
ENSAPLT00000017135
355120 - 508802
153683