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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_36958627_37103249_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
36958627 - 37103249
Intron Length:
144623

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTACAAATG
5'SS Class:
major
3'SS Sequence:
GTTTCTCCTGCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CTTTAAC
U12 Branch Point Sequence:
GTTTCTTTCTGT
Flanking Amino Acid:
GTEKAQMEQEGLVKLGVHCV
Intron Amino Acid Position:
16

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
73.4
0.55
1.1
69
41.8
Major BPS
77.3
0.68
1
79.3
29.4
Major PPT
83.7
0.76
0.8
77.8
31
Minor 5ss
35.4
-1.7
3.3
48.6
47.1
Minor BPS
40
-0.6
3.6
71.96
45.3

Associated Gene:

Gene:
BRSK2
Ensembl Gene ID:
ENSAPLG00000009397
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000044466
36804516 - 37103380
298865