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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_37154778_37154938_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
37154778 - 37154938
Intron Length:
161

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAT|GTGAGTTGG
5'SS Class:
major
3'SS Sequence:
TTTTTTTTTTAAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTATGAA
U12 Branch Point Sequence:
TTTTTTTTTAAG
Flanking Amino Acid:
LKKEHEYICHVYVGELPQDF
Intron Amino Acid Position:
30

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
77.8
0.66
1
67.8
39.9
Major BPS
75.5
0.63
1
66
40.9
Major PPT
88.4
0.86
0.9
94.6
18.5
Minor 5ss
36.6
-1.5
2.9
44.8
43.4
Minor BPS
56.3
0.05
1.8
67.7
39.9

Associated Gene:

Gene:
TOLLIP
Ensembl Gene ID:
ENSAPLG00000020119
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000022438
37145659 - 37170470
24812
ENSAPLT00000028188
37145659 - 37170470
24812
ENSAPLT00000025517
37147368 - 37170470
23103