About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_37155089_37157479_F

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
37155089 - 37157479
Intron Length:
2391

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTATAAATC
5'SS Class:
major
3'SS Sequence:
TTTTCTCTTTCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ACTTAAA
U12 Branch Point Sequence:
ATGCACTTAAAG
Flanking Amino Acid:
VGRLSITVVQAKLAKNYGMT
Intron Amino Acid Position:
80

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
76
0.61
1
74
34.5
Major BPS
69
0.47
1
69.9
32.6
Major PPT
94.1
0.99
0.5
92.8
16.8
Minor 5ss
43.5
-0.7
3
60.5
44.2
Minor BPS
53
-0
1.7
58.11
42.7

Associated Gene:

Gene:
TOLLIP
Ensembl Gene ID:
ENSAPLG00000020119
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000028188
37145659 - 37170470
24812
ENSAPLT00000025517
37147368 - 37170470
23103
ENSAPLT00000022438
37145659 - 37170470
24812
ENSAPLT00000044832
37153725 - 37170470
16746
ENSAPLT00000029818
37145659 - 37170470
24812