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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_37157663_37159012_F

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
37157663 - 37159012
Intron Length:
1350

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTCAGAATG
5'SS Class:
major
3'SS Sequence:
GTTTTCCTTTCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTAGAA
U12 Branch Point Sequence:
ATGATCTGGACA
Flanking Amino Acid:
DSFYLEIFDERAFSMDDRIA
Intron Amino Acid Position:
141

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
77.7
0.65
1.3
75.5
40.6
Major BPS
70
0.5
1
67
39.8
Major PPT
88.1
0.86
0.7
85.4
29.3
Minor 5ss
32.5
-2
2.9
40.4
45.3
Minor BPS
51.6
0.04
1.5
61.61
38.2

Associated Gene:

Gene:
TOLLIP
Ensembl Gene ID:
ENSAPLG00000020119
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000022438
37145659 - 37170470
24812
ENSAPLT00000044832
37153725 - 37170470
16746
ENSAPLT00000029818
37145659 - 37170470
24812
ENSAPLT00000028188
37145659 - 37170470
24812
ENSAPLT00000025517
37147368 - 37170470
23103