About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_37196132_37196412_R

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
37196132 - 37196412
Intron Length:
281

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GTC|GTGAGTTTT
5'SS Class:
major
3'SS Sequence:
TGTTTCTCCTTAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCTTAT
U12 Branch Point Sequence:
CTTATCTGAACA
Flanking Amino Acid:
CIAWRTPSICPLFCDYYNQQ
Intron Amino Acid Position:
169

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
70.3
0.48
1.3
76.6
34.9
Major BPS
91.4
1.03
0.7
79.9
34.9
Major PPT
79
0.65
0.7
78
30.8
Minor 5ss
42.2
-0.9
3
58.8
40.3
Minor BPS
64.1
0.44
1.5
72.66
39.1

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000028747
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000042339
37195977 - 37199504
3528