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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_37196570_37198035_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
37196570 - 37198035
Intron Length:
1466

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTATTACCA
5'SS Class:
major
3'SS Sequence:
TATTTTATAACAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATTTTAT
U12 Branch Point Sequence:
TATTTTATAACA
Flanking Amino Acid:
SNVFAACHSQVEPAKYYQAC
Intron Amino Acid Position:
117

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
71
0.5
1.1
59.8
38.8
Major BPS
87.7
0.94
0.8
77.7
36.7
Major PPT
78.7
0.65
1
74.8
38.4
Minor 5ss
38.4
-1.3
3
49.4
46.3
Minor BPS
66.5
0.51
1.5
77.05
33.3

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000028747
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000042339
37195977 - 37199504
3528