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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_37244348_37244967_R

Intron Information:

Intron Rank:
15
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
37244348 - 37244967
Intron Length:
620

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAGTGGT
5'SS Class:
strong_major
3'SS Sequence:
GTTTTCAAATCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTCAA
U12 Branch Point Sequence:
AATTTCTGAATC
Flanking Amino Acid:
YCEGSCDAYSRYSQEANMME
Intron Amino Acid Position:
541

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
95.7
1.08
0.7
85.2
32.2
Major BPS
90.8
1.01
0.7
91.9
19.6
Major PPT
69.7
0.44
1
68.8
41
Minor 5ss
34.4
-1.8
3.3
49.7
46.6
Minor BPS
65.7
0.47
1.3
70.71
34

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000008356
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000008680
37243695 - 37254697
11003