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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_37246631_37247372_R

Intron Information:

Intron Rank:
12
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
37246631 - 37247372
Intron Length:
742

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAACTAAC
5'SS Class:
strong_major
3'SS Sequence:
TAATTACTTTCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATTTAAT
U12 Branch Point Sequence:
TCTAATTTAATT
Flanking Amino Acid:
TEDNTTHVLKIGEYWHQPGN
Intron Amino Acid Position:
444

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.8
0.8
1.1
81.4
32.7
Major BPS
90.7
1.01
0.7
90
19.9
Major PPT
78.5
0.64
0.9
74.9
39.6
Minor 5ss
41.6
-0.9
2.6
54
43.3
Minor BPS
63.7
0.51
1.5
77.3
39.6

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000008356
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000008680
37243695 - 37254697
11003