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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_37247472_37247575_R

Intron Information:

Intron Rank:
11
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
37247472 - 37247575
Intron Length:
104

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATG|GTGAGTACT
5'SS Class:
strong_major
3'SS Sequence:
TCTTTTAAACCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTAAA
U12 Branch Point Sequence:
TTTCTTTTAAAC
Flanking Amino Acid:
PVICDTYCPMGYKYAVEPGK
Intron Amino Acid Position:
411

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.9
0.85
0.8
82.3
30
Major BPS
90.4
1
0.7
90.2
19.3
Major PPT
73.4
0.53
1
68
41.4
Minor 5ss
33.1
-1.9
2.7
40.7
39.2
Minor BPS
68.8
0.57
1.3
76.65
32.7

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000008356
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000008680
37243695 - 37254697
11003