Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_37248113_37248290_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

37248113 - 37248290

Intron Length:

178

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

GCA|GTAAGTACC

5'SS Class:

major

3'SS Sequence:

TCCTTCTTTCCAG|G

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

TTTGTAC

U12 Branch Point Sequence:

ACCTCTATGACG

Flanking Amino Acid:

PGKCCPTFECRHGCVVNETY

Intron Amino Acid Position:

358

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

77.1

0.64

72.9

36.6

Major BPS

61.6

0.29

1.4

63.4

Major PPT

87.5

0.84

0.7

Minor 5ss

39.2

-1.2

2.7

37.4

Minor BPS

49.4

-0.1

1.7

53.19

42.1

Associated Gene:

Gene:

Ensembl Gene ID:

ENSAPLG00000008356

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000008680

37243695 - 37254697

11003