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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_37250523_37250823_R

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
37250523 - 37250823
Intron Length:
301

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTATGGAAA
5'SS Class:
strong_major
3'SS Sequence:
CCTCCCACCCTAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TATTCAA
U12 Branch Point Sequence:
TGGTATTCAAAT
Flanking Amino Acid:
GSINPATCEQSSVDHPGYGV
Intron Amino Acid Position:
219

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.5
0.79
0.9
76.6
33.7
Major BPS
83
0.82
0.8
83.9
25.3
Major PPT
63.8
0.31
0.8
54.9
29.2
Minor 5ss
37.7
-1.4
3.1
47.6
48.1
Minor BPS
48.9
-0
1.8
67.49
42.8

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000008356
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000008680
37243695 - 37254697
11003