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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_37251341_37252254_R

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
37251341 - 37252254
Intron Length:
914

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAA|GTAAGAAAA
5'SS Class:
strong_major
3'SS Sequence:
TTTCTCTCTGCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CATTAAA
U12 Branch Point Sequence:
TTAGCATTAAAG
Flanking Amino Acid:
VPELCKIILSKVFAECHDVI
Intron Amino Acid Position:
136

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.7
0.77
0.9
79.7
27.9
Major BPS
70.2
0.5
1
71.6
30.1
Major PPT
89.7
0.89
0.6
85.1
22.4
Minor 5ss
34.5
-1.8
3
40.8
39.4
Minor BPS
54
-0
1.9
63.06
44.1

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000008356
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000008680
37243695 - 37254697
11003