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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_37260907_37261512_R

Intron Information:

Intron Rank:
22
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
37260907 - 37261512
Intron Length:
606

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GTC|GTAAGTCCC
5'SS Class:
major
3'SS Sequence:
CTCCTTCCTCTAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
AATTAAA
U12 Branch Point Sequence:
TTTTCTGTCATT
Flanking Amino Acid:
CISWRTPSICPLFCDYYNPQ
Intron Amino Acid Position:
1079

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
69.2
0.45
1.3
62.4
42.4
Major BPS
73.8
0.59
0.9
74
26.8
Major PPT
77
0.61
0.7
69.5
31.3
Minor 5ss
37
-1.5
2.9
46.8
35.4
Minor BPS
53.6
0.19
2.4
82.98
39.3

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000011334
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000011814
37256691 - 37280948
24258