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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_37262504_37263011_R

Intron Information:

Intron Rank:
20
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
37262504 - 37263011
Intron Length:
508

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTATATTTT
5'SS Class:
strong_major
3'SS Sequence:
TATCCCCATGCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TACTGAT
U12 Branch Point Sequence:
TTTTGTTTATCC
Flanking Amino Acid:
IFIKLSPSFQGHVCGLCGNY
Intron Amino Acid Position:
947

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.6
0.75
0.9
82.9
29.9
Major BPS
83.5
0.83
0.8
71.6
36.4
Major PPT
73.3
0.52
0.9
66.9
34
Minor 5ss
55.6
0.19
2.5
75.5
40.6
Minor BPS
61.3
0.33
2
77.75
38.7

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000011334
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000011814
37256691 - 37280948
24258