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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_37263881_37264449_R

Intron Information:

Intron Rank:
17
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
37263881 - 37264449
Intron Length:
569

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CTG|GTAAGAATT
5'SS Class:
strong_major
3'SS Sequence:
TCATCTTATACAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTCAT
U12 Branch Point Sequence:
TTTTTTTTACAT
Flanking Amino Acid:
GESIRVGCNNCTCRNRKWHC
Intron Amino Acid Position:
802

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87.2
0.88
0.8
86.3
28.9
Major BPS
100
1.24
0.5
100
0
Major PPT
77.8
0.63
0.9
72.7
36.4
Minor 5ss
39.6
-1.2
3.2
55.5
42.8
Minor BPS
64.8
0.54
1.7
84.29
36.6

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000011334
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000011814
37256691 - 37280948
24258